/*
    Copyright (C) 2012 Bartosz Broda, Jacek Bochenek, Łukasz Biłeńkij, 
    Damian Jaworski, Wojciech Mazur, Dominik Piasecki, Maciej Piasecki, 
    Radosław Ramocki
    
    This program is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as published by the Free
Software Foundation; either version 3 of the License, or (at your option)
any later version.

    This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
or FITNESS FOR A PARTICULAR PURPOSE. 

    See the LICENSE and COPYING files for more details.
*/

#ifndef _ROCK_OPTIONS
#define _ROCK_OPTIONS

#include <iostream>
#include <boost/program_options.hpp>

namespace clustering
{
	namespace ROCK
	{
		struct Params
		{
			std::string matrix_dir;
			std::string matrix_name;
			std::string output_file;
			// add to options description:
			double simlinktreshold;
			size_t numberofgroups;
			size_t minclustersize;
		};

		class Options
		{
		public:

			Options(int argc, char **argv);

			Params & GetParams();

		private:

			void ParseOptions(int argc, char **argv);

			Params params;
		};
	}
}

#endif //_ROCK_OPTIONS
