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## weka.associations
Class Tertius

    java.lang.Object
      weka.associations.AbstractAssociator
          weka.associations.Tertius

All Implemented Interfaces:
  java.io.Serializable, java.lang.Cloneable, java.lang.Runnable, Associator, CapabilitiesHandler, OptionHandler, RevisionHandler, TechnicalInformationHandler

    public class Tertius

extends AbstractAssociator
implements OptionHandler, java.lang.Runnable, TechnicalInformationHandler

Finds rules according to confirmation measure (Tertius-type algorithm).
For more information see:
P. A. Flach, N. Lachiche (1999). Confirmation-Guided Discovery of first-order rules with Tertius. Machine Learning. 42:61-95.

BibTeX:

     @article{Flach1999,
        author = {P. A. Flach and N. Lachiche},
        journal = {Machine Learning},
        pages = {61-95},
        title = {Confirmation-Guided Discovery of first-order rules with Tertius},
        volume = {42},
        year = {1999}
     }

Valid options are:

     -K <number of values in result>
      Set maximum number of confirmation  values in the result. (default: 10)

     -F <frequency threshold>
      Set frequency threshold for pruning. (default: 0)

     -C <confirmation threshold>
      Set confirmation threshold. (default: 0)

     -N <noise threshold>
      Set noise threshold : maximum frequency of counter-examples.
      0 gives only satisfied rules. (default: 1)

     -R
      Allow attributes to be repeated in a same rule.

     -L <number of literals>
      Set maximum number of literals in a rule. (default: 4)

     -G <0=no negation | 1=body | 2=head | 3=body and head>
      Set the negations in the rule. (default: 0)

     -S
      Consider only classification rules.

     -c <class index>
      Set index of class attribute. (default: last).

     -H
      Consider only horn clauses.

     -E
      Keep equivalent rules.

     -M
      Keep same clauses.

     -T
      Keep subsumed rules.

     -I <0=always match | 1=never match | 2=significant>
      Set the way to handle missing values. (default: 0)

     -O
      Use ROC analysis.

     -p <name of file>
      Set the file containing the parts of the individual for individual-based learning.

     -P <0=no output | 1=on stdout | 2=in separate window>
      Set output of current values. (default: 0)

Version:
  $Revision: 6368 $
Author:
  Amelie Deltour
See Also:
  Serialized Form

Field Summary
`static int` | `EXPLICIT` Way of handling missing values: min counterinstances
`static int` | `IMPLICIT` Way of handling missing values: max counterinstances
`static int` | `SIGNIFICANT` Way of handling missing values: missing as a particular value

Constructor Summary
`Tertius()` Constructor that sets the options to the default values.

Method Summary
`void` | `buildAssociations(Instances instances)` Method that launches the search to find the rules with the highest confirmation.
`java.lang.String` | `classificationTipText()` Returns the tip text for this property.
`java.lang.String` | `classIndexTipText()` Returns the tip text for this property.
`java.lang.String` | `confirmationThresholdTipText()` Returns the tip text for this property.
`java.lang.String` | `confirmationValuesTipText()` Returns the tip text for this property.
`boolean` | `disabled_getEquivalent()` Get the value of equivalent.
`java.io.File` | `disabled_getPartFile()` Get the value of partFile.
`boolean` | `disabled_getSameClause()` Get the value of sameClause.
`boolean` | `disabled_getSubsumption()` Get the value of subsumption.
`void` | `disabled_setEquivalent(boolean v)` Set the value of equivalent.
`void` | `disabled_setPartFile(java.io.File v)` Set the value of partFile.
`void` | `disabled_setSameClause(boolean v)` Set the value of sameClause.
`void` | `disabled_setSubsumption(boolean v)` Set the value of subsumption.
`java.lang.String` | `equivalentTipText()` Returns the tip text for this property.
`java.lang.String` | `frequencyThresholdTipText()` Returns the tip text for this property.
`Capabilities` | `getCapabilities()` Returns default capabilities of the classifier.
`boolean` | `getClassification()` Get the value of classification.
`int` | `getClassIndex()` Get the value of classIndex.
`double` | `getConfirmationThreshold()` Get the value of confirmationThreshold.
`int` | `getConfirmationValues()` Get the value of confirmationValues.
`double` | `getFrequencyThreshold()` Get the value of frequencyThreshold.
`boolean` | `getHornClauses()` Get the value of hornClauses.
`SelectedTag` | `getMissingValues()` Get the value of missingValues.
`SelectedTag` | `getNegation()` Get the value of negation.
`double` | `getNoiseThreshold()` Get the value of noiseThreshold.
`int` | `getNumberLiterals()` Get the value of numberLiterals.
`java.lang.String[]` | `getOptions()` Gets the current settings of the Tertius object.
`boolean` | `getRepeatLiterals()` Get the value of repeatLiterals.
`SimpleLinkedList` | `getResults()` returns the results
`java.lang.String` | `getRevision()` Returns the revision string.
`boolean` | `getRocAnalysis()` Get the value of rocAnalysis.
`TechnicalInformation` | `getTechnicalInformation()` Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
`SelectedTag` | `getValuesOutput()` Get the value of valuesOutput.
`java.lang.String` | `globalInfo()` Returns a string describing this associator.
`java.lang.String` | `hornClausesTipText()` Returns the tip text for this property.
`java.util.Enumeration` | `listOptions()` Returns an enumeration describing the available options.
`static void` | `main(java.lang.String[] args)` Main method.
`java.lang.String` | `missingValuesTipText()` Returns the tip text for this property.
`java.lang.String` | `negationTipText()` Returns the tip text for this property.
`java.lang.String` | `noiseThresholdTipText()` Returns the tip text for this property.
`java.lang.String` | `numberLiteralsTipText()` Returns the tip text for this property.
`java.lang.String` | `partFileTipText()` Returns the tip text for this property.
`java.lang.String` | `repeatLiteralsTipText()` Returns the tip text for this property.
`void` | `resetOptions()` Resets the options to the default values.
`java.lang.String` | `rocAnalysisTipText()` Returns the tip text for this property.
`void` | `run()` Run the search.
`java.lang.String` | `sameClauseTipText()` Returns the tip text for this property.
`void` | `search()` Search in the space of hypotheses the rules that have the highest confirmation.
`void` | `setClassification(boolean v)` Set the value of classification.
`void` | `setClassIndex(int v)` Set the value of classIndex.
`void` | `setConfirmationThreshold(double v)` Set the value of confirmationThreshold.
`void` | `setConfirmationValues(int v)` Set the value of confirmationValues.
`void` | `setFrequencyThreshold(double v)` Set the value of frequencyThreshold.
`void` | `setHornClauses(boolean v)` Set the value of hornClauses.
`void` | `setMissingValues(SelectedTag v)` Set the value of missingValues.
`void` | `setNegation(SelectedTag v)` Set the value of negation.
`void` | `setNoiseThreshold(double v)` Set the value of noiseThreshold.
`void` | `setNumberLiterals(int v)` Set the value of numberLiterals.
`void` | `setOptions(java.lang.String[] options)` Parses a given list of options.
`void` | `setRepeatLiterals(boolean v)` Set the value of repeatLiterals.
`void` | `setRocAnalysis(boolean v)` Set the value of rocAnalysis.
`void` | `setValuesOutput(SelectedTag v)` Set the value of valuesOutput.
`java.lang.String` | `subsumptionTipText()` Returns the tip text for this property.
`java.lang.String` | `toString()` Outputs the best rules found with their confirmation value and number of counter-instances.
`java.lang.String` | `valuesOutputTipText()` Returns the tip text for this property.

Methods inherited from class weka.associations.AbstractAssociator
`forName, makeCopies, makeCopy`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Field Detail

### EXPLICIT

    public static final int EXPLICIT

  Way of handling missing values: min counterinstances

  See Also:
    Constant Field Values

### IMPLICIT

    public static final int IMPLICIT

  Way of handling missing values: max counterinstances

  See Also:
    Constant Field Values

### SIGNIFICANT

    public static final int SIGNIFICANT

  Way of handling missing values: missing as a particular value

  See Also:
    Constant Field Values

Constructor Detail

### Tertius

    public Tertius()

  Constructor that sets the options to the default values.

Method Detail

### globalInfo

    public java.lang.String globalInfo()

  Returns a string describing this associator.

  Returns:
    A description of the evaluator suitable for displaying in the explorer/experimenter gui.

### getTechnicalInformation

    public TechnicalInformation getTechnicalInformation()

  Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.

  Specified by:
    `getTechnicalInformation` in interface `TechnicalInformationHandler`
  Returns:
    the technical information about this class

### resetOptions

    public void resetOptions()

  Resets the options to the default values.

### listOptions

    public java.util.Enumeration listOptions()

  Returns an enumeration describing the available options.

  Specified by:
    `listOptions` in interface `OptionHandler`
  Returns:
    An enumeration of all the available options.

### setOptions

    public void setOptions(java.lang.String[] options)
                    throws java.lang.Exception

  Parses a given list of options.

  Valid options are:

       -K <number of values in result>
        Set maximum number of confirmation  values in the result. (default: 10)

       -F <frequency threshold>
        Set frequency threshold for pruning. (default: 0)

       -C <confirmation threshold>
        Set confirmation threshold. (default: 0)

       -N <noise threshold>
        Set noise threshold : maximum frequency of counter-examples.
        0 gives only satisfied rules. (default: 1)

       -R
        Allow attributes to be repeated in a same rule.

       -L <number of literals>
        Set maximum number of literals in a rule. (default: 4)

       -G <0=no negation | 1=body | 2=head | 3=body and head>
        Set the negations in the rule. (default: 0)

       -S
        Consider only classification rules.

       -c <class index>
        Set index of class attribute. (default: last).

       -H
        Consider only horn clauses.

       -E
        Keep equivalent rules.

       -M
        Keep same clauses.

       -T
        Keep subsumed rules.

       -I <0=always match | 1=never match | 2=significant>
        Set the way to handle missing values. (default: 0)

       -O
        Use ROC analysis.

       -p <name of file>
        Set the file containing the parts of the individual for individual-based learning.

       -P <0=no output | 1=on stdout | 2=in separate window>
        Set output of current values. (default: 0)

  Specified by:
    `setOptions` in interface `OptionHandler`
  Parameters:
    `options` - The list of options as an array of strings.
  Throws:
    `java.lang.Exception` - if an option is not supported.

### getOptions

    public java.lang.String[] getOptions()

  Gets the current settings of the Tertius object.

  Specified by:
    `getOptions` in interface `OptionHandler`
  Returns:
    An array of strings suitable for passing to setOptions.

### confirmationValuesTipText

    public java.lang.String confirmationValuesTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getConfirmationValues

    public int getConfirmationValues()

  Get the value of confirmationValues.

  Returns:
    Value of confirmationValues.

### setConfirmationValues

    public void setConfirmationValues(int v)

  Set the value of confirmationValues.

  Parameters:
    `v` - Value to assign to confirmationValues.

### frequencyThresholdTipText

    public java.lang.String frequencyThresholdTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getFrequencyThreshold

    public double getFrequencyThreshold()

  Get the value of frequencyThreshold.

  Returns:
    Value of frequencyThreshold.

### setFrequencyThreshold

    public void setFrequencyThreshold(double v)

  Set the value of frequencyThreshold.

  Parameters:
    `v` - Value to assign to frequencyThreshold.

### confirmationThresholdTipText

    public java.lang.String confirmationThresholdTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getConfirmationThreshold

    public double getConfirmationThreshold()

  Get the value of confirmationThreshold.

  Returns:
    Value of confirmationThreshold.

### setConfirmationThreshold

    public void setConfirmationThreshold(double v)

  Set the value of confirmationThreshold.

  Parameters:
    `v` - Value to assign to confirmationThreshold.

### noiseThresholdTipText

    public java.lang.String noiseThresholdTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getNoiseThreshold

    public double getNoiseThreshold()

  Get the value of noiseThreshold.

  Returns:
    Value of noiseThreshold.

### setNoiseThreshold

    public void setNoiseThreshold(double v)

  Set the value of noiseThreshold.

  Parameters:
    `v` - Value to assign to noiseThreshold.

### repeatLiteralsTipText

    public java.lang.String repeatLiteralsTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getRepeatLiterals

    public boolean getRepeatLiterals()

  Get the value of repeatLiterals.

  Returns:
    Value of repeatLiterals.

### setRepeatLiterals

    public void setRepeatLiterals(boolean v)

  Set the value of repeatLiterals.

  Parameters:
    `v` - Value to assign to repeatLiterals.

### numberLiteralsTipText

    public java.lang.String numberLiteralsTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getNumberLiterals

    public int getNumberLiterals()

  Get the value of numberLiterals.

  Returns:
    Value of numberLiterals.

### setNumberLiterals

    public void setNumberLiterals(int v)

  Set the value of numberLiterals.

  Parameters:
    `v` - Value to assign to numberLiterals.

### negationTipText

    public java.lang.String negationTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getNegation

    public SelectedTag getNegation()

  Get the value of negation.

  Returns:
    Value of negation.

### setNegation

    public void setNegation(SelectedTag v)

  Set the value of negation.

  Parameters:
    `v` - Value to assign to negation.

### classificationTipText

    public java.lang.String classificationTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getClassification

    public boolean getClassification()

  Get the value of classification.

  Returns:
    Value of classification.

### setClassification

    public void setClassification(boolean v)

  Set the value of classification.

  Parameters:
    `v` - Value to assign to classification.

### classIndexTipText

    public java.lang.String classIndexTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getClassIndex

    public int getClassIndex()

  Get the value of classIndex.

  Returns:
    Value of classIndex.

### setClassIndex

    public void setClassIndex(int v)

  Set the value of classIndex.

  Parameters:
    `v` - Value to assign to classIndex.

### hornClausesTipText

    public java.lang.String hornClausesTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getHornClauses

    public boolean getHornClauses()

  Get the value of hornClauses.

  Returns:
    Value of hornClauses.

### setHornClauses

    public void setHornClauses(boolean v)

  Set the value of hornClauses.

  Parameters:
    `v` - Value to assign to hornClauses.

### equivalentTipText

    public java.lang.String equivalentTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### disabled_getEquivalent

    public boolean disabled_getEquivalent()

  Get the value of equivalent.

  Returns:
    Value of equivalent.

### disabled_setEquivalent

    public void disabled_setEquivalent(boolean v)

  Set the value of equivalent.

  Parameters:
    `v` - Value to assign to equivalent.

### sameClauseTipText

    public java.lang.String sameClauseTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### disabled_getSameClause

    public boolean disabled_getSameClause()

  Get the value of sameClause.

  Returns:
    Value of sameClause.

### disabled_setSameClause

    public void disabled_setSameClause(boolean v)

  Set the value of sameClause.

  Parameters:
    `v` - Value to assign to sameClause.

### subsumptionTipText

    public java.lang.String subsumptionTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### disabled_getSubsumption

    public boolean disabled_getSubsumption()

  Get the value of subsumption.

  Returns:
    Value of subsumption.

### disabled_setSubsumption

    public void disabled_setSubsumption(boolean v)

  Set the value of subsumption.

  Parameters:
    `v` - Value to assign to subsumption.

### missingValuesTipText

    public java.lang.String missingValuesTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getMissingValues

    public SelectedTag getMissingValues()

  Get the value of missingValues.

  Returns:
    Value of missingValues.

### setMissingValues

    public void setMissingValues(SelectedTag v)

  Set the value of missingValues.

  Parameters:
    `v` - Value to assign to missingValues.

### rocAnalysisTipText

    public java.lang.String rocAnalysisTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getRocAnalysis

    public boolean getRocAnalysis()

  Get the value of rocAnalysis.

  Returns:
    Value of rocAnalysis.

### setRocAnalysis

    public void setRocAnalysis(boolean v)

  Set the value of rocAnalysis.

  Parameters:
    `v` - Value to assign to rocAnalysis.

### partFileTipText

    public java.lang.String partFileTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### disabled_getPartFile

    public java.io.File disabled_getPartFile()

  Get the value of partFile.

  Returns:
    Value of partFile.

### disabled_setPartFile

    public void disabled_setPartFile(java.io.File v)
                              throws java.lang.Exception

  Set the value of partFile.

  Parameters:
    `v` - Value to assign to partFile.
  Throws:
    `java.lang.Exception` - if file cannot be opened

### valuesOutputTipText

    public java.lang.String valuesOutputTipText()

  Returns the tip text for this property.

  Returns:
    Tip text for this property suitable for displaying in the explorer/experimenter GUI.

### getValuesOutput

    public SelectedTag getValuesOutput()

  Get the value of valuesOutput.

  Returns:
    Value of valuesOutput.

### setValuesOutput

    public void setValuesOutput(SelectedTag v)

  Set the value of valuesOutput.

  Parameters:
    `v` - Value to assign to valuesOutput.

### getCapabilities

    public Capabilities getCapabilities()

  Returns default capabilities of the classifier.

  Specified by:
    `getCapabilities` in interface `Associator`
  Specified by:
    `getCapabilities` in interface `CapabilitiesHandler`
  Overrides:
    `getCapabilities` in class `AbstractAssociator`
  Returns:
    the capabilities of this classifier
  See Also:
    `Capabilities`

### buildAssociations

    public void buildAssociations(Instances instances)
                           throws java.lang.Exception

  Method that launches the search to find the rules with the highest confirmation.

  Specified by:
    `buildAssociations` in interface `Associator`
  Parameters:
    `instances` - The instances to be used for generating the rules.
  Throws:
    `java.lang.Exception` - if rules can't be built successfully.

### run

    public void run()

  Run the search.

  Specified by:
    `run` in interface `java.lang.Runnable`

### search

    public void search()

  Search in the space of hypotheses the rules that have the highest confirmation. The search starts with the empty rule, other rules are generated by refinement.

### getResults

    public SimpleLinkedList getResults()

  returns the results

  Returns:
    the results

### toString

    public java.lang.String toString()

  Outputs the best rules found with their confirmation value and number of counter-instances. Also gives the number of hypotheses considered and explored, and the time needed.

  Overrides:
    `toString` in class `java.lang.Object`

### getRevision

    public java.lang.String getRevision()

  Returns the revision string.

  Specified by:
    `getRevision` in interface `RevisionHandler`
  Overrides:
    `getRevision` in class `AbstractAssociator`
  Returns:
    the revision

### main

    public static void main(java.lang.String[] args)

  Main method.

  Parameters:
    `args` - the commandline parameters

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